Merge branch 'added-publication-date' into 'main'

Added publication data, corrected missing chars in citation

See merge request monteuxs/monteux-2023-plant-removal!1

README.md

@@ -10,14 +10,14 @@ We show how non-specific biomass removal can result in false discoveries or fals
 
 In short, the scripts in this repository:
 
--   Create the conceptual Figure 1
--   Assess the significance of relationships between response variables and biomass removed in the gradient (gradient regression)
--   When these gradient regressions are significant:
-    -   Adjust response variables to account for the confounding effect of removed biomass
-    -   Simulate variation to assess how variability in the gradient regression
--   Analyze the treatment effects on the observed, adjusted or simulated data
--   Create Figure 4 to illustrate the procedure and its effect on three response variables
--   Create Supplementary Figures S1 and S2 
+- Create the conceptual Figure 1
+- Assess the significance of relationships between response variables and biomass removed in the gradient (gradient regression)
+- When these gradient regressions are significant:
+  - Adjust response variables to account for the confounding effect of removed biomass
+  - Simulate variation to assess how variability in the gradient regression
+- Analyze the treatment effects on the observed, adjusted or simulated data
+- Create Figure 4 to illustrate the procedure and its effect on three response variables
+- Create Supplementary Figures S1 and S2 
 
 ## Prerequisites
 
@@ -31,27 +31,27 @@ R.
 
 ## File description
 
--   Files not contained in `code` or `data` are not necessary to initiate the analysis and are provided for record. Such files will be created and/or overwritten as the scripts are executed.
--   `code/`
-    -   `Manuscript_figures.Rmd` and `Manuscript_figures.html` - R-markdown and HTML output of the figure-generation script
--   `data/`
-    -   `harmonized_data.csv` - Contains sample information, biomass removed and response variables
--   `results/` - Final result files
-    -   `Fig1_conceptual.pdf` - Figure 1
-    -   `Fig4_assembled.pdf` - Figure 4
-    -   `SI_Fig_1_biomass_cover.png` - Supplementary Figure S1
-    -   `SI_Fig_2_Bnana_growth_nonegatives.pdf` - Supplementary Figure S2
--  `sessionInfo.txt` - R environment file
--  `LICENCE` - Licence file
--   `./README.md` - This document
+- Files not contained in `code` or `data` are not necessary to initiate the analysis and are provided for record. Such files will be created and/or overwritten as the scripts are executed.
+- `code/`
+  - `Manuscript_figures.Rmd` and `Manuscript_figures.html` - R-markdown and HTML output of the figure-generation script
+- `data/`
+  - `harmonized_data.csv` - Contains sample information, biomass removed and response variables
+- `results/` - Final result files
+  - `Fig1_conceptual.pdf` - Figure 1
+  - `Fig4_assembled.pdf` - Figure 4
+  - `SI_Fig_1_biomass_cover.png` - Supplementary Figure S1
+  - `SI_Fig_2_Bnana_growth_nonegatives.pdf` - Supplementary Figure S2
+-`sessionInfo.txt` - R environment file
+-`LICENCE` - Licence file
+- `./README.md` - This document
 
 ## Citation
 
-nteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E.J., Lett, S., Pedersen, E.P., and Väisänen, M. (2023). Data analysis for adjusting effects of biomass removal in a mycorrhizal association-based plant removal experiment. Software version 1.0.0. Bolin Centre Code Repository. <https://doi.org/10.57669/monteux-2023-plant-removal-1.0.0>
+Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E.J., Lett, S., Pedersen, E.P., and Väisänen, M. (2023). Data analysis for adjusting effects of biomass removal in a mycorrhizal association-based plant removal experiment. Software version 1.0.0. Bolin Centre Code Repository. https://doi.org/10.57669/monteux-2023-plant-removal-1.0.0
 
 ## References
 
-Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E.J., Lett, S., Pedersen, E.P., and Väisänen, M. (2023). Controlling for biases in targeted plant removal experiments. bioRxiv, 2023.08.22.554120. <https://doi.org/10.1101/2023.08.22.554120>
+Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E.J., Lett, S., Pedersen, E.P., and Väisänen, M. (2023). Controlling for biases in targeted plant removal experiments. bioRxiv, 2023.08.22.554120. https://doi.org/10.1101/2023.08.22.554120
 
 Monteux, S., Blume-Werry, G., Gavazov, K., Kirchhoff, L., Krab, E.J., Lett, S., Pedersen, E.P., and Väisänen, M. (2023). Controlling for biases in targeted plant removal experiments. New Phytologist, Manuscript accepted for publication.
 
@@ -93,11 +93,11 @@ Bolin Centre Code Repository
 
 ## Project URL
 
-<https://abisko-lter.weebly.com/>
+https://abisko-lter.weebly.com/
 
 ## DOI
 
-<https://doi.org/10.57669/monteux-2023-plant-removal-1.0.0>
+https://doi.org/10.57669/monteux-2023-plant-removal-1.0.0
 
 ## License
 
@@ -105,4 +105,4 @@ Distributed under the GNU General Public License v3.0. See LICENSE text for more
 
 ## Publication date
 
-placeholder
+2023-10-25