.gitignore

LICENSE

README.md

code/01_mapping_data_upload.R

code/02_16S_dada2_process.sh

code/02_16S_dada2_process/02a_download_fastq_and_ref_data.sh

code/02_16S_dada2_process/02b_cutadapt.sh

code/02_16S_dada2_process/02c_dada2_process.R

code/02_16S_dada2_process/ENA_file_name_correspondence.txt

...e-download-read_run-PRJEB64296-fastq_ftp-20240124-1559.sh

code/02_16S_dada2_process/rename_fastq_files.sh

code/03_16S_process_dada2_output.Rmd

code/04_ITS_process_scata_output.Rmd

code/05_gradient_effect_univariate_variables.R

code/06_16S_manyglm_incl_gradient.R

code/07_ITS_manyglm_incl_gradient.R

code/08_16S_ITS_Ordinations.R

code/09_Random_forest_and_PLS.Rmd

code/10_Treatment_effect_univariate_variables.R

code/11_Figures.R